Boosting heritability
"Boosting heritability" is a software tool to enhance the precision and reliability of heritability estimates in genetic studies. Heritability, a cornerstone concept in genetics, measures the proportion of observed variability in a trait attributed to genetic differences among individuals. Traditional approaches to estimating heritability often rely on random-effect models, primarily for computational convenience. However, these methods can sometimes lack the precision and adaptability required for complex genetic data, mainly when dealing with high-dimensional datasets.
In contrast, "boosting heritability" employs a fixed-effect model approach, which has historically been less explored due to its computational complexity. This strategy integrates the strengths of various recent methodologies, employing a high-dimensional linear model to estimate heritability. One of the critical innovations of "boosting heritability" is its use of a multiple-sample splitting strategy. This approach divides the dataset into several subsamples, performs estimation on each, and then combines these estimates to achieve a final heritability estimate. This technique enhances the stability and accuracy of the heritability estimate, making it particularly effective for analyzing complex and high-dimensional genetic data.
Topic
Genotype and phenotype;Epigenomics;Genetic variation;Mapping
Detail
Operation: Splitting;Regression analysis;Antimicrobial resistance prediction
Software interface: Command-line interface
Language: R
License: Not stated
Cost: Free of charge
Version name: -
Credit: European Research Council.
Input: -
Output: -
Contact: The Tien Mai t.t.mai@medisin.uio.no
Collection: -
Maturity: -
Publications
- Boosting heritability: estimating the genetic component of phenotypic variation with multiple sample splitting.
- Mai TT, et al. Boosting heritability: estimating the genetic component of phenotypic variation with multiple sample splitting. Boosting heritability: estimating the genetic component of phenotypic variation with multiple sample splitting. 2021; 22:164. doi: 10.1186/s12859-021-04079-7
- https://doi.org/10.1186/S12859-021-04079-7
- PMID: 33773584
- PMC: PMC8004405
Download and documentation
Documentation: https://github.com/tienmt/boostingher/blob/master/README.md
Home page: https://github.com/tienmt/boostingher
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